PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1861
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 436aa    MW: 45735.1 Da    PI: 9.3566
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1861genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-051032123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Gh_D05G1861 10 FVCEICNKGFQRDQNLQLHRRGH 32
                 89*******************88 PP

2zf-C2H2163.5e-0586108123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC+ C+k +  +s+ k H++t+
  Gh_D05G1861  86 WKCERCSKKYAVQSDWKAHMKTC 108
                  58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.32E-7932No hitNo description
Gene3DG3DSA:3.30.160.601.4E-5932IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0171032IPR015880Zinc finger, C2H2-like
PfamPF121716.8E-51032IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9491032IPR007087Zinc finger, C2H2
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SMARTSM003552205181IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.4E-574107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.32E-781107No hitNo description
SMARTSM003557786106IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSLKQXTNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RTSKEIRKRV YVCPEPSCVH  60
HNPARALGDL TGIKKHFCRK HGERKWKCER CSKKYAVQSD WKAHMKTCGT REYKCDCGTI  120
FSRRDSFITH RAFCDALAEE SARTQTLGVA NPEGNINVNG NGSGNTTMVG GGAAATSPPP  180
QPLTPSTTSV VSPGLSIQSS EVPENPMGLS PAAVTTATTN VFASIFAPNS QPSKISAPSS  240
FLQATTPLER TSLSLSSPLY LSNNGSSIFT RPENDHCHYA PSPQPAMSAT ALLQKAAQMG  300
AAASNPSLLR GLGLAVSSAS PAGQDPNVKS ESNTATASLG LGFPSNGSSE LTNPMIGSSS  360
LFGNKPTTLD LLGLGMADGG ASSSGLSALL TSFGGGFNAG AATATSYGAG GSNNSPIETW  420
EGGAERKPNG PANAML
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.79370.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444978.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-122IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A0D2TSX80.0A0A0D2TSX8_G
STRINGVIT_18s0001g12220.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.15e-95indeterminate(ID)-domain 2